This report is based
The IDR failed in [% failed_idrs.size %] instances.
Experiment | Epigenome | Type | Error message |
---|---|---|---|
[% failed_idr.get_Experiment.name %] | [% failed_idr.get_Experiment.epigenome.short_name %] | [% failed_idr.type %] | [% failed_idr.failed_idr_pairs %] |
Peak calling failed in [% failed_peak_callings.size %] instances.
Name | Feature type | Broad peaks | Epigenome | Error message |
---|---|---|---|---|
[% failed_peak_calling.name %] | [% failed_peak_calling.get_FeatureType.name %] | [% boolean_to_yes_no( failed_peak_calling.get_FeatureType._creates_broad_peaks ) %] | [% failed_peak_calling.get_Epigenome.short_name %] | [% failed_peak_calling.error_message%] |
If the [% current_feature_type.name %] peaks from all epigenomes were projected to the genome, they would cover [% round_percent( peak_calling_statistic_adaptor .fetch_coverage_percent_by_FeatureType( current_feature_type ).value ) %]% of the genome.
To compute the proportion of genome in peaks, a genome length of [% format_number( genome_size_in_bp ) %] base pairs was used.
Epigenome | Feature type | Proportion of genome in peaks | Number of peaks | Average length |
---|---|---|---|---|
[% peak_calling.get_Epigenome.short_name %] | [% peak_calling.get_FeatureType.name %] | [% round_percent( length_to_percent( peak_calling_statistic_adaptor .fetch_by_PeakCalling_total_length( peak_calling, 'total_length' ).value ) ) %] | [% format_number( peak_calling_statistic_adaptor .fetch_by_PeakCalling_total_length( peak_calling, 'num_peaks' ).value ) %] | [% format_number( peak_calling_statistic_adaptor .fetch_by_PeakCalling_total_length( peak_calling, 'average_length' ).value ) %] |
Experiment | Feature type | Read type | Replicate configurations | Number of reads | Sum of read file sizes in GB | Ratio of read counts: signal/control | IDR type | Max peaks | Failed IDR pairs |
---|---|---|---|---|---|---|---|---|---|
[% experiment.name %] | [% experiment.feature_type.name %] | [% experiment.summarise_read_types %] | [% experiment.summarise_replicate_configurations %] | [% format_number( experiment.sum_number_of_reads ) %] | [% format_number( bytes_to_gb ( experiment.sum_read_file_sizes ) ) %] | [% round_num( experiment.signal_to_control_read_file_ratio ) %] | [% idr.type %] | [% format_number( idr.max_peaks ) %] | [% idr.failed_idr_pairs %] |
Experiment | Feature type | Read type | Replicate configurations | Number of reads | Sum of read file sizes in GB |
---|---|---|---|---|---|
[% experiment.name %] | [% experiment.feature_type.name %] | [% experiment.summarise_read_types %] | [% experiment.summarise_replicate_configurations %] | [% format_number( experiment.sum_number_of_reads ) %] | [% format_number( bytes_to_gb ( experiment.sum_read_file_sizes ) ) %] |